PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474912
Common NameARALYDRAFT_474912
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 340aa    MW: 36921.7 Da    PI: 7.5517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474912genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-19135185256
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
              y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  474912 135 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 185
             59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.27E-17134194No hitNo description
Gene3DG3DSA:3.30.730.106.6E-31135193IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22135192IPR016177DNA-binding domain
SMARTSM003801.1E-36135198IPR001471AP2/ERF domain
PROSITE profilePS5103223.301135192IPR001471AP2/ERF domain
PRINTSPR003674.5E-10136147IPR001471AP2/ERF domain
PfamPF008473.5E-13136185IPR001471AP2/ERF domain
PRINTSPR003674.5E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEESNDLFQT NFSPKISEIR ASLSQIILAG GPNTLDSIFS LLTPSTVESA ATSFNNLNPQ  60
PPPQLGSSVY LRQRDIIEKF HLQNRAISST HPPLFSSSFD HHQTSELMLQ AAAGTPAAAF  120
AAALAAGRTM KKKKLYRGVR QRHWGKWVAE IRLPQNRMRV WLGTYDTAEA AAYAYDRAAY  180
KLRGEYARLN FPNLKDPSEL LGLGDSSKLI ALKNAVDGKI QSICQRVRKE RAKKSGKVSK  240
NPSATADSSC LSSPEILSSS PATTTTTAVN SEDSYWVSPM GLCNSEISSP ASVSVSDEIP  300
AMTTATAEEE AMMGVDTDGF LLARMPSFDP ELIWEVLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20132192263ATERF1
3gcc_A6e-20132192263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0666890.0AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence.
GenBankAK2287630.0AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15.
GenBankAY5608760.0AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds.
GenBankBT0330820.0BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886346.10.0hypothetical protein ARALYDRAFT_474912
SwissprotQ9C7W20.0ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLD7KSA80.0D7KSA8_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.2__42__AT1G64380.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-156ERF family protein